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Species belonging to selected taxon:

Pinus pinaster



ABOUT THIS RECORD

ID: MNEST002034
species: Pinus pinaster
miRNA family: miR1863
source: miRNEST

Taxonomy by NCBI:
Pinus pinaster Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGCTCTGATACCATGTTGAAG

miRNA*
TCAACTTTGTCAAAGCCCT

mismatches: 4
bulges: 2

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pre-miRNA
TATACTGATCCTTCAACTTTGTCAAAGCCCTTCAACTTGCTTTGCTGCCTTTGTTGCAGTTGATCCTTGAATGTCTCTTTTTGTTGCCCTTCCTTTGACA
TCAACACCTTAGCTCTGATACCATGTTGAAGAATCTAAGG


dot-bracket secondary structure
......(((.(((((((..(((((.(((...((((((.((...((.......)).))))))))...((((.((((.....................))))
)))).......))).)))))....))))))).))).....



SIMILARITIES
miRBase osa-MIR1873: 0.0004

PMRD osa-miR1873: 0.0004

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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